CABS-dock: 3befc3831e5a535

Project name: 3befc3831e5a535

Status: done

submitted: 2026-01-19 19:27:13, status changed: 2026-01-20 04:28:25

Project settings

Protein sequence(s)	SDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSMYRLPNVHGSDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSMYRLPNVH input pdb
Peptide sequence	RIRRACG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.963	2.79667	30.1893	81
cluster_2.pdb ( medoid)	21.4243	5.41442	32.7783	116
cluster_3.pdb ( medoid)	21.1242	5.20731	21.3472	110
cluster_4.pdb ( medoid)	17.4657	5.15297	21.5154	90
cluster_5.pdb ( medoid)	16.14	8.4263	37.9113	136
cluster_6.pdb ( medoid)	14.0277	8.0555	28.5581	113
cluster_7.pdb ( medoid)	9.19323	14.4672	48.6175	133
cluster_8.pdb ( medoid)	8.55476	5.8447	30.535	50
cluster_9.pdb ( medoid)	8.21252	11.2024	32.637	92
cluster_10.pdb ( medoid)	7.7049	10.2532	33.6657	79