CABS-dock: 3c66d124916d406

Project name: 3c66d124916d406

Status: done

submitted: 2026-03-18 04:47:34, status changed: 2026-03-18 08:24:35

Project settings

Protein sequence(s)	MAREENVYMAKLAEQAERYEEMVQFMEKVSTSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVKCIKEYRSKIESELSNICDGILKLLDSNLIPSASNGDSKVFYLKMKGDYHRYLAEFTTGAERKEAAESTLSAYKAAQDIANTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKETKPDNEQQ input pdb
Peptide sequence	RGRFSPTRY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.2924	2.93197	29.4435	124
cluster_2.pdb ( medoid)	31.13	5.20399	22.2981	162
cluster_3.pdb ( medoid)	28.5597	4.06167	26.3821	116
cluster_4.pdb ( medoid)	17.7288	7.72754	31.4869	137
cluster_5.pdb ( medoid)	16.2193	6.78202	25.1769	110
cluster_6.pdb ( medoid)	14.7925	6.35456	30.4438	94
cluster_7.pdb ( medoid)	13.7793	6.45898	25.2594	89
cluster_8.pdb ( medoid)	11.0482	6.69791	31.565	74
cluster_9.pdb ( medoid)	4.59874	10.6551	25.1534	49
cluster_10.pdb ( medoid)	4.37989	10.2742	40.6794	45