CABS-dock: 3d3ae3487edb780

Project name: 3d3ae3487edb780

Status: done

submitted: 2026-01-22 13:17:22, status changed: 2026-01-22 13:49:55

Project settings

Protein sequence(s)	PEITLIIFGVIAGVIGTILLISYGIRRL input pdb
Peptide sequence	RTAPKRGTVSEEKKHF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.3831	7.56956	27.2702	177
cluster_2.pdb ( medoid)	16.572	6.15496	17.6913	102
cluster_3.pdb ( medoid)	15.1621	8.83781	23.3005	134
cluster_4.pdb ( medoid)	13.6344	7.92114	19.2318	108
cluster_5.pdb ( medoid)	13.1022	9.38774	23.7208	123
cluster_6.pdb ( medoid)	10.6778	8.14772	25.1156	87
cluster_7.pdb ( medoid)	8.55534	10.8704	26.229	93
cluster_8.pdb ( medoid)	7.10672	9.14627	18.8632	65
cluster_9.pdb ( medoid)	6.11303	13.0868	29.3819	80
cluster_10.pdb ( medoid)	1.95904	15.8241	34.3763	31