CABS-dock: D336

Project name: D336_UPPS

Status: done

submitted: 2026-06-13 06:22:04, status changed: 2026-06-13 09:57:52

Project settings

Protein sequence(s)	KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE input pdb
Peptide sequence	QMVPYPQRAMPV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.0886	2.56817	16.2538	67
cluster_2.pdb ( medoid)	21.4114	6.6787	33.1127	143
cluster_3.pdb ( medoid)	18.743	2.82772	19.8915	53
cluster_4.pdb ( medoid)	15.8566	10.4688	24.4481	166
cluster_5.pdb ( medoid)	14.3435	9.83021	23.5593	141
cluster_6.pdb ( medoid)	14.3328	10.326	37.1812	148
cluster_7.pdb ( medoid)	12.6518	7.58788	16.6536	96
cluster_8.pdb ( medoid)	11.9151	7.04988	25.479	84
cluster_9.pdb ( medoid)	5.74084	12.1933	28.3288	70
cluster_10.pdb ( medoid)	1.80914	17.688	36.7526	32