CABS-dock: 3f50199643c2f05

Project name: 3f50199643c2f05

Status: done

submitted: 2026-04-11 14:33:16, status changed: 2026-04-11 16:13:57

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RRRVQPYGSNDARRH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.9923	7.04585	17.7937	162
cluster_2.pdb ( medoid)	21.4193	7.5166	27.4071	161
cluster_3.pdb ( medoid)	20.4905	6.10039	14.8856	125
cluster_4.pdb ( medoid)	18.0055	6.22032	21.8736	112
cluster_5.pdb ( medoid)	16.669	5.99916	16.7724	100
cluster_6.pdb ( medoid)	15.906	8.17303	24.5302	130
cluster_7.pdb ( medoid)	7.2333	7.18897	25.5423	52
cluster_8.pdb ( medoid)	6.62492	11.019	19.1193	73
cluster_9.pdb ( medoid)	5.24843	10.4793	19.871	55
cluster_10.pdb ( medoid)	3.92885	7.63582	19.8675	30