CABS-dock: 3fd837524a130e5

Project name: 3fd837524a130e5

Status: done

submitted: 2026-01-12 17:39:43, status changed: 2026-01-13 06:57:02

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	NLNIKNSSAKGADDKVVQLNANTHL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.318	3.77852	22.8657	107
cluster_2.pdb ( medoid)	12.364	10.6762	46.0983	132
cluster_3.pdb ( medoid)	11.1873	9.56439	68.3344	107
cluster_4.pdb ( medoid)	9.70981	11.8437	57.3197	115
cluster_5.pdb ( medoid)	9.6674	9.61996	41.8352	93
cluster_6.pdb ( medoid)	8.22826	12.5178	44.5569	103
cluster_7.pdb ( medoid)	6.57799	25.6917	85.7725	169
cluster_8.pdb ( medoid)	2.75065	7.27101	19.8239	20
cluster_9.pdb ( medoid)	1.92707	26.4651	53.3556	51
cluster_10.pdb ( medoid)	1.50372	14.6304	41.1966	22