CABS-dock: 40e5c949298a7af

Project name: 40e5c949298a7af

Status: done

submitted: 2025-08-01 07:55:00, status changed: 2025-08-01 15:01:56

Project settings

Protein sequence(s)	PWEECFQAAVQLALRAGQIIRKALTEETKTSAADLVTETDHLVEDLIISELRERFPSHRFIAEEAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLHAKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMACRVVAASTREMAMLIAQALQTINY input pdb
Peptide sequence	GEFLRTSCGSP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	49.8419	3.57129	26.0889	178
cluster_2.pdb ( medoid)	26.7356	4.45099	21.1284	119
cluster_3.pdb ( medoid)	23.0904	5.24026	9.37181	121
cluster_4.pdb ( medoid)	22.6019	4.73411	10.2796	107
cluster_5.pdb ( medoid)	19.4956	9.43803	29.2382	184
cluster_6.pdb ( medoid)	13.9493	6.88208	20.0838	96
cluster_7.pdb ( medoid)	6.6412	8.73336	17.6299	58
cluster_8.pdb ( medoid)	6.39794	7.50242	16.5518	48
cluster_9.pdb ( medoid)	5.46929	6.58221	29.6604	36
cluster_10.pdb ( medoid)	5.05784	10.4788	31.5217	53