CABS-dock: primed p27

Project name: primed p27

Status: done

submitted: 2025-05-09 14:49:39, status changed: 2025-05-09 20:09:59

Project settings

Protein sequence(s)	TPIATFVSGSPSLNTYNATTVNSSANAFSCAYYLQQWNIQGLLVTSLYLKLDSATMGNRPGDLNSANAKWFTFWVSAYLQQCNPSGIQAGTVSPSTATLTDFEPMANRSVTSPWTYSANGYYEPSIGEFQVFSPVVTGAWNPGNIGIRVLPVPVSASGERYTLLCYSLQCTNASIFNPNNSGTMIVGPVLYSCPAASLP input pdb
Peptide sequence	MQKHCG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	38.3964	5.41718	21.4062	208
cluster_2.pdb ( medoid)	20.4465	5.52662	28.0882	113
cluster_3.pdb ( medoid)	19.4267	3.60329	13.5972	70
cluster_4.pdb ( medoid)	19.1071	9.47294	39.2903	181
cluster_5.pdb ( medoid)	12.3695	9.53961	31.2456	118
cluster_6.pdb ( medoid)	12.192	9.02231	33.9959	110
cluster_7.pdb ( medoid)	10.0832	7.53727	22.9989	76
cluster_8.pdb ( medoid)	8.44706	5.91922	16.0372	50
cluster_9.pdb ( medoid)	4.77451	8.58726	21.597	41
cluster_10.pdb ( medoid)	3.59523	9.17883	19.5599	33