CABS-dock: 6CAM

Project name: 6CAM_PEP

Status: done

submitted: 2026-04-05 08:40:35, status changed: 2026-04-05 15:03:52

Project settings

Protein sequence(s)	TAVADYQKAKAEFPQKQEQYNKDFEKYQSDVKEYEAQKAAYEQYKKEVAQGLASGRVEKAQGLVFINEPEAKLSIEGVNQYLTKEARQKHATEDILQQYNTDNYTASDFTQANPYDPKEDTWFKMKVGDQISVTYDNIVNSKYNDKKISKVKINYTLNSSTNNEGSALVNLFHDPTKTIFIGAQTSNAGRNDKISVTMQIIFYDENGNEIDLSGNNAIMSLSSLNHWTTKYGDHVEKVNLGDNEFVKIPGSSVDLHGNEIYSAKDNQYKANGATFNGDGADGWDAVNADGTPRAATAYYGAGAMTYKGEPFTFTVGGNDQNLPTTIWFATNSAVAVPKDPGAKPTPPEKPE input pdb
Peptide sequence	TQANFNTLRSLGVKGAVVKA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHCCCCCEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.968	4.18774	11.9707	159
cluster_2.pdb ( medoid)	28.4413	4.00825	16.1067	114
cluster_3.pdb ( medoid)	26.068	4.33482	9.78545	113
cluster_4.pdb ( medoid)	24.8133	4.51372	11.5976	112
cluster_5.pdb ( medoid)	20.8784	4.0712	9.45866	85
cluster_6.pdb ( medoid)	12.1564	9.0487	35.6097	110
cluster_7.pdb ( medoid)	11.7394	2.38512	6.40493	28
cluster_8.pdb ( medoid)	8.9344	10.5211	26.5548	94
cluster_9.pdb ( medoid)	8.61579	12.6512	32.7407	109
cluster_10.pdb ( medoid)	6.79523	11.1843	24.017	76