CABS-dock: 42923edf683958

Project name: 42923edf683958

Status: done

submitted: 2026-06-12 08:46:11, status changed: 2026-06-12 17:35:08

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	QKMRKIMTEEAGKA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	55.3001	1.79023	9.63473	99
cluster_2.pdb ( medoid)	26.5915	5.64091	25.2347	150
cluster_3.pdb ( medoid)	24.0158	5.37146	21.5879	129
cluster_4.pdb ( medoid)	19.7431	4.81182	17.2031	95
cluster_5.pdb ( medoid)	11.9215	10.2336	44.568	122
cluster_6.pdb ( medoid)	8.32206	12.6171	31.7928	105
cluster_7.pdb ( medoid)	7.65098	13.7237	47.5087	105
cluster_8.pdb ( medoid)	6.35569	9.44036	43.0067	60
cluster_9.pdb ( medoid)	4.37742	16.2196	45.0075	71
cluster_10.pdb ( medoid)	2.73976	23.3597	44.4087	64