CABS-dock: cpca05

Project name: cpca05

Status: done

submitted: 2026-06-24 06:12:28, status changed: 2026-06-24 11:44:36

Project settings

Protein sequence(s)	WRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDDTLWGPGDSRLQLNFRATQPLNGRVIEASFP input pdb
Peptide sequence	GLNAEAEKLGL
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.4973	3.66225	18.2513	130
cluster_2.pdb ( medoid)	25.2739	4.82711	17.3092	122
cluster_3.pdb ( medoid)	24.951	2.12416	10.7898	53
cluster_4.pdb ( medoid)	24.8229	5.07596	14.0291	126
cluster_5.pdb ( medoid)	18.9648	7.90939	35.5024	150
cluster_6.pdb ( medoid)	18.782	6.70855	32.1262	126
cluster_7.pdb ( medoid)	14.0832	7.5977	32.7324	107
cluster_8.pdb ( medoid)	7.59719	7.10789	33.9205	54
cluster_9.pdb ( medoid)	6.04085	11.9188	30.0158	72
cluster_10.pdb ( medoid)	4.72183	12.7069	41.1077	60