CABS-dock: 445518a1d9e54d5

Project name: 445518a1d9e54d5

Status: done

submitted: 2025-03-10 15:36:07, status changed: 2025-03-11 00:12:02

Project settings

Protein sequence(s)	SSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCRTLPFLKCYCSGHCPDDAINNTCITNGHCFAIIEEDDQGETTLASGCMKYEGSDFQCKDSPKAQLRRTIECCRTNLCNQYLQPTLPPSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCRTLPFLKCYCSGHCPDDAINNTCITNGHCFAIIEEDDQGETTLASGCMKYEGSDFQCKDSPKAQLRRTIECCRTNLCNQYLQPTLPPVVI input pdb
Peptide sequence	SDFTERYTKHI
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	43.4029	1.63584	13.3012	71
cluster_2.pdb ( medoid)	26.7904	6.45754	21.5965	173
cluster_3.pdb ( medoid)	23.9473	11.1495	63.4752	267
cluster_4.pdb ( medoid)	15.6843	2.29529	20.39	36
cluster_5.pdb ( medoid)	14.1532	9.75045	39.7081	138
cluster_6.pdb ( medoid)	13.2418	8.76013	29.6142	116
cluster_7.pdb ( medoid)	9.29585	8.39084	21.9299	78
cluster_8.pdb ( medoid)	5.42092	10.3303	37.6633	56
cluster_9.pdb ( medoid)	4.02858	4.71631	7.66241	19
cluster_10.pdb ( medoid)	3.96459	11.6027	25.7037	46