CABS-dock: 44645e9ca31e9a1

Project name: 44645e9ca31e9a1

Status: done

submitted: 2026-07-27 06:01:38, status changed: 2026-07-27 09:08:10

Project settings

Protein sequence(s)	MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIRGEGVAAQVLVKLGAELTRVRQQVIQLLSG input pdb
Peptide sequence	MEVVMIDATFVDMLLMEWMV
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEEHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.4605	5.39117	15.0724	175
cluster_2.pdb ( medoid)	31.7264	3.30955	20.6634	105
cluster_3.pdb ( medoid)	28.7023	4.07632	17.9999	117
cluster_4.pdb ( medoid)	25.9445	5.43467	25.1238	141
cluster_5.pdb ( medoid)	16.9964	5.94245	22.939	101
cluster_6.pdb ( medoid)	12.7205	5.34571	14.6653	68
cluster_7.pdb ( medoid)	7.0445	14.4794	29.2817	102
cluster_8.pdb ( medoid)	6.96836	10.3324	23.5719	72
cluster_9.pdb ( medoid)	4.88839	14.5242	34.0765	71
cluster_10.pdb ( medoid)	3.25512	14.746	29.8083	48