CABS-dock: 4490e839ae7a9d0

Project name: 4490e839ae7a9d0

Status: done

submitted: 2026-04-14 09:15:37, status changed: 2026-04-14 16:08:43

Project settings

Protein sequence(s)	NQFVQPSWRIALWSLAYGVVVAVAVLGNLIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSATATKIVIGSIWILAFLLAFPQCLYSKTKVMPGRTLCFVQWPEGPKQHFTYHIIVIILVYCFPLLIMGITYTIVGITLWGEQLKAKRKVVKMMIIVVMTFAICWLPYHIYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFKR input pdb
Peptide sequence	KVLNGPEEEAAAPAE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	66.1801	3.12783	11.5871	207
cluster_2.pdb ( medoid)	28.9699	4.69453	12.6846	136
cluster_3.pdb ( medoid)	20.7064	4.63626	13.7879	96
cluster_4.pdb ( medoid)	17.4726	5.26538	12.1097	92
cluster_5.pdb ( medoid)	16.4908	10.9151	21.4519	180
cluster_6.pdb ( medoid)	14.2194	5.69644	23.6344	81
cluster_7.pdb ( medoid)	9.28967	6.0282	11.3392	56
cluster_8.pdb ( medoid)	7.64336	10.4666	30.5199	80
cluster_9.pdb ( medoid)	6.68488	5.23569	12.3813	35
cluster_10.pdb ( medoid)	2.95764	12.51	32.1314	37