CABS-dock: 44a22f89edcb988

Project name: 44a22f89edcb988

Status: done

submitted: 2026-03-18 12:34:25, status changed: 2026-03-18 21:58:53

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	RHPRPRLSFMAIPPKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	117.201	0.691123	1.8933	81
cluster_2.pdb ( medoid)	54.3611	1.98671	13.8037	108
cluster_3.pdb ( medoid)	49.8413	2.00637	4.35152	100
cluster_4.pdb ( medoid)	24.5598	7.41049	23.2158	182
cluster_5.pdb ( medoid)	20.7024	5.16849	37.0462	107
cluster_6.pdb ( medoid)	15.3009	6.2088	16.9868	95
cluster_7.pdb ( medoid)	13.6967	9.7834	22.505	134
cluster_8.pdb ( medoid)	12.8048	8.51241	23.3146	109
cluster_9.pdb ( medoid)	6.08065	10.5252	25.5472	64
cluster_10.pdb ( medoid)	5.84261	3.42313	20.6775	20