CABS-dock: DRAMP01630m

Project name: DRAMP01630m

Status: done

submitted: 2024-07-25 15:16:07, status changed: 2024-07-25 21:57:36

Project settings

Protein sequence(s)

SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMVLPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ input pdb

Peptide sequence

AVWKDFLKNIGKAAGKAVLNSVTDMVNE

Simulation mc cycles

Peptide secondary structure psipred

CHHHHHHHHHHHHHHHHHHHHHHHHHCC

Contact information

163:A 1:PEP 5.0 1.0

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.949	4.43177	30.8344	115
cluster_2.pdb ( medoid)	24.7829	7.74728	30.4251	192
cluster_3.pdb ( medoid)	18.5566	6.08947	19.727	113
cluster_4.pdb ( medoid)	15.6058	10.0604	30.3512	157
cluster_5.pdb ( medoid)	11.1125	8.18895	18.6507	91
cluster_6.pdb ( medoid)	8.99967	12.0004	26.7572	108
cluster_7.pdb ( medoid)	8.5276	7.97411	31.4273	68
cluster_8.pdb ( medoid)	6.64314	9.93506	32.5049	66
cluster_9.pdb ( medoid)	4.91288	5.08866	12.6133	25
cluster_10.pdb ( medoid)	4.34693	14.9531	30.955	65