CABS-dock: Trail_223_to_236

Project name: Trail_223_to_236_

Status: done

submitted: 2025-12-26 17:36:10, status changed: 2025-12-26 21:54:20

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	MKSARNSCWSKDAE
Simulation mc cycles	100
Peptide secondary structure psipred	CCCCCHHCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	107.772	0.965003	17.0628	104
cluster_2.pdb ( medoid)	21.7659	6.01858	18.1429	131
cluster_3.pdb ( medoid)	15.3796	9.75316	37.2607	150
cluster_4.pdb ( medoid)	14.2949	10.3533	28.1702	148
cluster_5.pdb ( medoid)	9.75	13.9487	44.6905	136
cluster_6.pdb ( medoid)	9.6318	8.202	20.8049	79
cluster_7.pdb ( medoid)	9.39298	2.44864	10.7452	23
cluster_8.pdb ( medoid)	9.13258	12.5923	26.3656	115
cluster_9.pdb ( medoid)	9.12063	8.4424	24.5313	77
cluster_10.pdb ( medoid)	3.1883	11.6049	34.2236	37