CABS-dock: 4592ecfd24a5241

Project name: 4592ecfd24a5241

Status: done

submitted: 2026-03-16 22:34:45, status changed: 2026-03-17 02:20:51

Project settings

Protein sequence(s)	MTSKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTPMTSKMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTWASHEKMHEGDEGPGHHHKPGLGEGTP input pdb
Peptide sequence	WGWSLSHGYQVK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.717	3.25489	16.318	113
cluster_2.pdb ( medoid)	34.3692	2.47315	5.54509	85
cluster_3.pdb ( medoid)	30.4066	1.97326	4.443	60
cluster_4.pdb ( medoid)	25.2391	4.23945	18.5795	107
cluster_5.pdb ( medoid)	17.4505	8.02271	22.4352	140
cluster_6.pdb ( medoid)	15.4007	8.24638	19.4377	127
cluster_7.pdb ( medoid)	13.5061	8.58874	22.7385	116
cluster_8.pdb ( medoid)	10.9346	10.0598	23.7894	110
cluster_9.pdb ( medoid)	10.2258	5.67191	13.2263	58
cluster_10.pdb ( medoid)	7.04401	11.925	29.7983	84