CABS-dock: 6ATS_LAV

Project name: 6ATS_LAV_L1

Status: done

submitted: 2026-06-03 07:19:00, status changed: 2026-06-04 02:09:36

Project settings

Protein sequence(s)	GSHSMRYFYTSVSRPGRGEPRFIISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE input pdb
Peptide sequence	LAVGHPYFPIKKPNN
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	57.1712	1.92405	6.0152	110
cluster_2.pdb ( medoid)	49.2728	3.83579	14.8041	189
cluster_3.pdb ( medoid)	48.697	2.58743	7.87489	126
cluster_4.pdb ( medoid)	24.2773	4.24264	9.1134	103
cluster_5.pdb ( medoid)	16.5657	4.04449	9.1151	67
cluster_6.pdb ( medoid)	14.6023	4.51984	9.58925	66
cluster_7.pdb ( medoid)	10.854	5.89644	11.8297	64
cluster_8.pdb ( medoid)	8.88943	6.18713	13.306	55
cluster_9.pdb ( medoid)	6.90012	7.5361	16.2789	52
cluster_10.pdb ( medoid)	4.66253	15.8712	61.383	74