CABS-dock: 46d53318737e4c3

Project name: 46d53318737e4c3

Status: done

submitted: 2026-01-13 16:37:54, status changed: 2026-01-14 05:11:16

Project settings

Protein sequence(s)	QIIPSNTTSPPTNSTSPPTNATAPAPSPTNTITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPNSNSEFPWIK input pdb
Peptide sequence	TVQNPQDASKPN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.7903	5.94153	20.2636	177
cluster_2.pdb ( medoid)	21.9169	5.20147	20.7907	114
cluster_3.pdb ( medoid)	16.0444	3.73961	9.63716	60
cluster_4.pdb ( medoid)	13.6869	9.35203	26.4065	128
cluster_5.pdb ( medoid)	10.1794	8.74315	20.5344	89
cluster_6.pdb ( medoid)	9.94183	10.9638	30.205	109
cluster_7.pdb ( medoid)	9.508	7.15187	14.0274	68
cluster_8.pdb ( medoid)	8.57486	10.6124	19.3871	91
cluster_9.pdb ( medoid)	7.15007	5.59435	10.7887	40
cluster_10.pdb ( medoid)	1.98001	12.1211	22.8156	24