CABS-dock: CD36

Project name: CD36

Status: done

submitted: 2026-02-26 12:03:37, status changed: 2026-02-27 01:57:00

Project settings

Protein sequence(s)	QKTIKKQVVLEEGTIAFKNWVKTGTEVYRQFWIFDVQNPQEVMMNSSNIQVKQRGPYTYRVRFLAKENVTQDAEDNTVSFLQPNGAIFEPSLSVGTEADNFTVLNLAVAAASHIYQNQFVQMILNSLINKSKSSMFQVRTLRELLWGYRDPFLSLVPYPVTTTVGLFYPYNNTADGVYKVFNGKDNISKVAIIDTYKGKRNLSYWESHCDMINGTDAASFPPFVEKSQVLQFFSSDICRSIYAVFESDVNLKGIPVYRFVLPSKAFASPVENPDNYCFCTEKIISKNCTSYGVLDISKCKEGRPVYISLPHFLYASPDVSEPIDGLNPNEEEHRTYLDIEPITGFTLQFAKRLQVNLLVKPSEKIQVLKNLKRNYIVPILWLNETGTIGDEKANMFRSQV input pdb
Peptide sequence	EAFDDAISELEK
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.3971	5.52242	43.2314	201
cluster_2.pdb ( medoid)	29.0029	3.44794	18.287	100
cluster_3.pdb ( medoid)	22.0955	5.61201	32.8264	124
cluster_4.pdb ( medoid)	16.082	7.46177	48.895	120
cluster_5.pdb ( medoid)	13.9204	8.6923	40.4962	121
cluster_6.pdb ( medoid)	12.5943	9.36932	36.0033	118
cluster_7.pdb ( medoid)	11.0629	6.50821	26.7196	72
cluster_8.pdb ( medoid)	8.12687	7.13682	19.2683	58
cluster_9.pdb ( medoid)	2.87417	18.4401	35.8051	53
cluster_10.pdb ( medoid)	1.88657	17.4921	35.9253	33