CABS-dock: PEPTIDE17

Project name: PEPTIDE17

Status: done

submitted: 2025-07-02 11:33:43, status changed: 2025-07-02 15:41:21

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FNKKN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	14.8843	5.84509	35.4734	87
cluster_2.pdb ( medoid)	14.8519	7.6758	22.2512	114
cluster_3.pdb ( medoid)	14.6675	8.18136	22.2625	120
cluster_4.pdb ( medoid)	12.917	8.28364	25.2432	107
cluster_5.pdb ( medoid)	11.6204	12.0478	26.1657	140
cluster_6.pdb ( medoid)	10.8744	9.56375	24.1504	104
cluster_7.pdb ( medoid)	10.6296	8.93727	19.3362	95
cluster_8.pdb ( medoid)	10.5538	7.20123	26.6583	76
cluster_9.pdb ( medoid)	8.93858	8.50247	17.1644	76
cluster_10.pdb ( medoid)	7.69251	10.5297	28.9606	81