CABS-dock: 4797a5b9a3e47d6

Project name: 4797a5b9a3e47d6

Status: done

submitted: 2026-06-23 11:58:48, status changed: 2026-06-24 00:48:28

Project settings

Protein sequence(s)	VSPPKDLVVTEVTEETVNLAWDNEMRVTEYLVVYTPTHEGGLEMQFRVPGDQTSTIIQELEPGVEYFIRVFAILENKKSIPVSARVATYLPAPEGLKFKSIKETSVEVEWDPLDIAFETWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQEYEISLHIVKNNTRGPGLKRVTTTRLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLDAPRNLRRVSQTDNSITLEWRNGKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKEDKESNPATINAATELDTPKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGVQLPRNTTSYVLRGLEPGQEYNVLLTAEKGRHKSKPARV input pdb
Peptide sequence	STDSTSAPASNLQPASEYS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.8333	2.09032	28.1623	54
cluster_2.pdb ( medoid)	15.7935	1.89952	5.03797	30
cluster_3.pdb ( medoid)	13.9402	5.09319	11.908	71
cluster_4.pdb ( medoid)	12.8894	7.75834	21.6628	100
cluster_5.pdb ( medoid)	6.69858	7.01641	17.3604	47
cluster_6.pdb ( medoid)	5.2362	6.87522	16.3219	36
cluster_7.pdb ( medoid)	3.05656	5.88897	10.3255	18
cluster_8.pdb ( medoid)	2.4862	9.65329	29.2167	24
cluster_9.pdb ( medoid)	2.44521	8.17927	30.3195	20
cluster_10.pdb ( medoid)	2.32544	5.16032	9.57539	12