CABS-dock: 481116257914cf3

Project name: 481116257914cf3

Status: done

submitted: 2025-04-15 09:47:46, status changed: 2025-04-15 11:15:01

Project settings

Protein sequence(s)	RLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR input pdb
Peptide sequence	VCESAHKDCS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.8631	5.34619	21.322	165
cluster_2.pdb ( medoid)	28.7615	3.78979	20.9316	109
cluster_3.pdb ( medoid)	27.593	5.18247	24.1542	143
cluster_4.pdb ( medoid)	20.0148	6.49519	17.3228	130
cluster_5.pdb ( medoid)	16.216	6.16677	13.8728	100
cluster_6.pdb ( medoid)	15.7215	7.25121	23.3717	114
cluster_7.pdb ( medoid)	11.7563	6.2945	11.4935	74
cluster_8.pdb ( medoid)	9.0679	10.1457	28.2903	92
cluster_9.pdb ( medoid)	6.7328	6.68369	21.6782	45
cluster_10.pdb ( medoid)	5.18269	5.4026	10.2311	28