CABS-dock: 4978d68d70937aa

Project name: 4978d68d70937aa

Status: done

submitted: 2026-01-20 09:23:55, status changed: 2026-01-20 15:00:45

Project settings

Protein sequence(s)	IPVFLILFIALVGLVGNGFVLWLLGFRMRRNAFSVYVLSLAGADFLFLCFQIINCLVYLSNFFCSISINFPSFFTTVMTCAYLAGLSMLSTVSTERCLSVLWPIWYRCRRPRHLSAVVCVLLWALSLLLSILEGKFCGFLFSDGDSGWCQTFDFITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLVFLLCGLPFGIQWFLILWIWKDSDVLFCHIHPVSVVLSSLNSSANPIIYFFVGS input pdb
Peptide sequence	RPKPQQFFGLM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	117.242	0.878523	5.98247	103
cluster_2.pdb ( medoid)	83.3225	1.22416	6.70296	102
cluster_3.pdb ( medoid)	34.4529	2.75739	7.89354	95
cluster_4.pdb ( medoid)	33.3711	5.60365	14.7481	187
cluster_5.pdb ( medoid)	27.8248	1.58132	3.75072	44
cluster_6.pdb ( medoid)	25.6901	2.17983	4.10669	56
cluster_7.pdb ( medoid)	18.8	8.56385	18.3131	161
cluster_8.pdb ( medoid)	8.48321	10.8449	25.8106	92
cluster_9.pdb ( medoid)	7.17098	11.9928	32.0709	86
cluster_10.pdb ( medoid)	6.83955	10.8194	31.8068	74