CABS-dock: 1hd9

Project name: 1hd9

Status: done

submitted: 2025-12-12 13:25:12, status changed: 2025-12-12 16:46:51

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	LCTASIPPQCY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.0122	2.0637	6.11127	64
cluster_2.pdb ( medoid)	23.0071	4.91152	30.4419	113
cluster_3.pdb ( medoid)	20.2682	7.49942	21.3385	152
cluster_4.pdb ( medoid)	16.8657	8.59735	28.5565	145
cluster_5.pdb ( medoid)	16.7923	3.45395	16.9721	58
cluster_6.pdb ( medoid)	13.4231	13.1862	53.4754	177
cluster_7.pdb ( medoid)	9.1632	10.4767	20.6212	96
cluster_8.pdb ( medoid)	6.91977	10.983	23.4904	76
cluster_9.pdb ( medoid)	6.70319	11.1887	23.5342	75
cluster_10.pdb ( medoid)	5.51203	7.98254	19.4526	44