CABS-dock: 49c15991aa7c1f3

Project name: 49c15991aa7c1f3

Status: done

submitted: 2025-04-22 12:18:38, status changed: 2025-04-22 18:21:06

Project settings

Protein sequence(s)	QPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDSFFKWDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTK input pdb
Peptide sequence	LSGLSAAQLDLNTTS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCHHHCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.1862	5.72822	21.7279	150
cluster_2.pdb ( medoid)	21.629	5.17824	25.9262	112
cluster_3.pdb ( medoid)	19.8852	9.7057	29.3307	193
cluster_4.pdb ( medoid)	18.4669	5.95661	16.5753	110
cluster_5.pdb ( medoid)	14.8644	4.3056	9.81073	64
cluster_6.pdb ( medoid)	10.6063	7.35414	17.0807	78
cluster_7.pdb ( medoid)	10.2106	3.72163	10.5145	38
cluster_8.pdb ( medoid)	9.5577	8.89335	21.5728	85
cluster_9.pdb ( medoid)	8.5095	11.9866	33.1815	102
cluster_10.pdb ( medoid)	7.8375	8.67624	28.3894	68