CABS-dock: 8XE9:TLCFK

Project name: 8XE9:TLCFK

Status: done

submitted: 2026-03-12 11:53:17, status changed: 2026-03-12 18:59:16

Project settings

Protein sequence(s)	EVQLVESGGGLVQPGGSLRLSCAVSGFTVSRNYMTWARQAPGKGPEWVSVIYPGGSTFYADSVKGRFTISRDSSKNILYLQMNSLRVDDTAVYYCARDLTIRGEASWGQGTLVTVSSEIVMTQSPATLAVSPGERATLSCRASESFNSNLAWYQQKPGQAPRLLIYGASTRASDVPARFSGSGSGTEFTLTISSVQSEDFAVYYCQQYGDWPLWTFGQGTKVEI input pdb
Peptide sequence	TLCFK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	36.4182	4.17374	11.8255	152
cluster_2.pdb ( medoid)	30.9797	5.00327	20.4699	155
cluster_3.pdb ( medoid)	28.514	5.01507	18.5863	143
cluster_4.pdb ( medoid)	17.3287	5.53993	26.1059	96
cluster_5.pdb ( medoid)	13.5237	6.28525	19.7516	85
cluster_6.pdb ( medoid)	13.3087	6.61224	22.1542	88
cluster_7.pdb ( medoid)	9.12948	9.74864	37.3426	89
cluster_8.pdb ( medoid)	6.20228	10.9637	34.6853	68
cluster_9.pdb ( medoid)	4.54059	14.3153	36.3042	65
cluster_10.pdb ( medoid)	3.62486	16.2765	35.6739	59