CABS-dock: EccCb1VSESXB

Project name: EccCb1VSESXB

Status: done

submitted: 2025-06-21 06:19:18, status changed: 2025-06-21 21:03:47

Project settings

Protein sequence(s)	APPVRVLPERIHLHELDPNPPGPESDYRTRWEIPIGLRETDLTPAHCHMHTNPHLLIFGAAKSGKTTIAHAIARAICARNSPQQVRFMLADYRSGLLDAVPDTHLLGAGAINRNSASLDEAVQALAVNLKKRLPPTDLTTAQLRSRSWWSGFDVVLLVDDWHMIVGAAGGMPPMAPLAPLLPAAADIGLHIIVTCQMSQAYKATMDKFVGAAFGSGAPTMFLSGEKQEFPSSEFKVKRRPPGQAFLVSPDGKEVIQAPYIEAPPVRVLPERIHLHELDPNPPGPESDYRTRWEIPIGLRETDLTPAHCHMHTNPHLLIFGAAKSGKTTIAHAIARAICARNSPQQVRFMLADYRSGLLDAVPDTHLLGAGAINRNSASLDEAVQALAVNLKKRLPPTDLTTAQLRSRSWWSGFDVVLLVDDWHMIVGAAGGMPPMAPLAPLLPAAADIGLHIIVTCQMSQAYKATMDKFVGAAFGSGAPTMFLSGEKQEFPSSEFKVKRRPPGQAFLVSPDGKEVIQAPYIE input pdb
Peptide sequence	AGVQYSRADEEQQQALSSQMGF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHHHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	75.6694	0.647554	4.00681	49
cluster_2.pdb ( medoid)	33.2004	3.07225	28.9976	102
cluster_3.pdb ( medoid)	30.956	3.97338	8.61098	123
cluster_4.pdb ( medoid)	21.0222	2.80656	5.3953	59
cluster_5.pdb ( medoid)	19.7701	5.4628	37.9227	108
cluster_6.pdb ( medoid)	17.1392	5.83457	10.3844	100
cluster_7.pdb ( medoid)	7.31065	5.74504	32.6619	42
cluster_8.pdb ( medoid)	5.79634	17.0797	44.7436	99
cluster_9.pdb ( medoid)	4.02544	7.20419	29.4381	29
cluster_10.pdb ( medoid)	3.66094	20.2134	40.8901	74