CABS-dock: 4b8795b8125d141

Project name: 4b8795b8125d141

Status: done

submitted: 2026-06-23 22:27:38, status changed: 2026-06-23 22:57:26

Project settings

Protein sequence(s)	KILKRLAAKIKKIL input pdb
Peptide sequence	GFLSILKKVLPKVMAHM
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	46.223	2.87736	12.3556	133
cluster_2.pdb ( medoid)	31.5177	5.45724	20.66	172
cluster_3.pdb ( medoid)	25.3007	4.86153	38.4387	123
cluster_4.pdb ( medoid)	22.3982	5.40221	29.8918	121
cluster_5.pdb ( medoid)	17.2451	7.94428	28.822	137
cluster_6.pdb ( medoid)	14.1825	5.28821	27.2751	75
cluster_7.pdb ( medoid)	13.0608	6.73773	25.8865	88
cluster_8.pdb ( medoid)	9.24252	7.89828	38.1338	73
cluster_9.pdb ( medoid)	1.86523	22.5173	44.2321	42
cluster_10.pdb ( medoid)	1.55405	22.5217	46.1674	35