CABS-dock: BLIND_R1_NEG05

Project name: BLIND_R1_NEG05_4A

Status: done

submitted: 2026-07-23 09:48:18, status changed: 2026-07-23 14:35:56

Project settings

Protein sequence(s)	KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK input pdb
Peptide sequence	SASADAPSDAINASS
Simulation mc cycles	50
Peptide secondary structure	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	67.0949	1.10291	3.76589	74
cluster_2.pdb ( medoid)	49.0349	3.69125	12.953	181
cluster_3.pdb ( medoid)	36.844	3.3384	31.4021	123
cluster_4.pdb ( medoid)	33.7238	2.01638	3.64621	68
cluster_5.pdb ( medoid)	26.1968	4.65706	20.9466	122
cluster_6.pdb ( medoid)	22.7844	8.20738	23.4373	187
cluster_7.pdb ( medoid)	21.1368	2.6021	5.18479	55
cluster_8.pdb ( medoid)	7.78235	10.7937	28.6322	84
cluster_9.pdb ( medoid)	3.96323	12.3636	35.7911	49
cluster_10.pdb ( medoid)	3.36803	16.9238	50.1186	57