CABS-dock: 4c0a9fe02b0adfe

Project name: 4c0a9fe02b0adfe

Status: done

submitted: 2026-07-08 09:35:16, status changed: 2026-07-08 13:23:27

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	ARARDFNGSSGGYDE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.5386	1.88209	8.8544	97
cluster_2.pdb ( medoid)	26.2786	4.56645	11.4133	120
cluster_3.pdb ( medoid)	20.8149	6.82205	27.5997	142
cluster_4.pdb ( medoid)	16.0264	7.05089	31.9192	113
cluster_5.pdb ( medoid)	11.5166	11.6354	32.3928	134
cluster_6.pdb ( medoid)	9.4319	10.6023	21.4016	100
cluster_7.pdb ( medoid)	9.06233	10.7037	36.2742	97
cluster_8.pdb ( medoid)	9.0021	6.33185	15.7199	57
cluster_9.pdb ( medoid)	6.14128	13.3523	34.5513	82
cluster_10.pdb ( medoid)	6.05892	9.57267	26.6374	58