CABS-dock: FHGQISSFN-AM

Project name: FHGQISSFN-AM

Status: done

submitted: 2025-07-02 10:55:12, status changed: 2025-07-02 21:20:58

Project settings

Protein sequence(s)	EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLKHWEFDDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA input pdb
Peptide sequence	FHGQISSFN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	71.2822	0.982012	4.99114	70
cluster_2.pdb ( medoid)	68.492	1.47463	18.3982	101
cluster_3.pdb ( medoid)	47.614	2.05822	20.7707	98
cluster_4.pdb ( medoid)	24.0342	1.74751	5.96383	42
cluster_5.pdb ( medoid)	22.8837	2.92785	13.9195	67
cluster_6.pdb ( medoid)	20.0257	5.49293	35.0731	110
cluster_7.pdb ( medoid)	19.7551	11.4907	48.3645	227
cluster_8.pdb ( medoid)	13.8483	11.5537	39.4684	160
cluster_9.pdb ( medoid)	6.98013	8.16603	32.4497	57
cluster_10.pdb ( medoid)	5.22368	13.0176	35.1672	68