CABS-dock: 4c6bdf5c06d930d

Project name: 4c6bdf5c06d930d

Status: done

submitted: 2026-07-22 21:18:23, status changed: 2026-07-23 03:17:42

Project settings

Protein sequence(s)	SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQAVL input pdb
Peptide sequence	AVLQSGFRK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.1812	5.90406	37.1709	190
cluster_2.pdb ( medoid)	24.7964	2.58101	8.28835	64
cluster_3.pdb ( medoid)	22.5241	6.48196	35.1942	146
cluster_4.pdb ( medoid)	14.1225	11.3294	38.2975	160
cluster_5.pdb ( medoid)	10.8294	7.38731	36.6534	80
cluster_6.pdb ( medoid)	9.04385	15.3696	49.2673	139
cluster_7.pdb ( medoid)	6.96134	11.2047	34.9358	78
cluster_8.pdb ( medoid)	3.10468	14.8163	37.8834	46
cluster_9.pdb ( medoid)	2.2062	22.2101	47.9165	49
cluster_10.pdb ( medoid)	2.18073	22.011	55.7282	48