CABS-dock: 4c77d7a0111e23c

Project name: 4c77d7a0111e23c

Status: done

submitted: 2026-01-16 17:24:29, status changed: 2026-01-17 06:53:31

Project settings

Protein sequence(s)	AQFTTPNTTSPPPPTTSPTTSPPTNTTSPPTNTTTPTNTITKAANITKPGCPKQCGNLTVPYPFGIGLGSGCAIDPNFEINCVTNATGSQTPFIWNIQVYDISDAEMRISNTLNRRCYSSTGVLLQDDPAWMNLGRSSPYSFSSLNRFNVIGCDDGGIINGRNFANGCPALCSSSSEVVEGKCLGFGCCQISIPKGLKYFNTSMISSKNHSGAWSFNPCGYAFLGEATRFQFRGVQDLTDVNFVEKVMDNVPIVVDWAIGNLSCIEAQKRNDYACLENSRCVDSDTGLGGYRCNCNSGYEGNPYIGSGCQDIDECADPNANSCENICINTPGSYNCSCPEGYTGDGKKNGRGCIAPSSNSEFPWIKFSVGKFPSN input pdb
Peptide sequence	GENQKPMFELAEGATLKNVNLGENE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	104.626	0.955787	4.16922	100
cluster_2.pdb ( medoid)	30.8074	3.47319	18.9909	107
cluster_3.pdb ( medoid)	14.8959	5.16922	10.476	77
cluster_4.pdb ( medoid)	13.9874	6.72031	18.9077	94
cluster_5.pdb ( medoid)	9.6832	6.29957	20.961	61
cluster_6.pdb ( medoid)	7.66303	8.74328	17.3484	67
cluster_7.pdb ( medoid)	7.31078	10.9427	24.709	80
cluster_8.pdb ( medoid)	5.93971	7.23941	21.6707	43
cluster_9.pdb ( medoid)	5.26686	7.21492	19.4921	38
cluster_10.pdb ( medoid)	4.37189	7.54822	15.3272	33