CABS-dock: 4cbdbd45d8c25b5

Project name: 4cbdbd45d8c25b5

Status: done

submitted: 2026-01-12 15:41:16, status changed: 2026-01-12 22:46:17

Project settings

Protein sequence(s)	TLFLATVLVSLCGLVGNGTVIWLLGFRIKRNPFSVYILNLAGADFAFLFCKSVRFLLLVLNRSVAVLNVLIRGVTFSSYLGGLSLLMAVSVERCLSVLFPIWYRCRRLAQLSAIACALIWGLSLCMGILVFLCVHFVDFLCDVVNLVYNGMFFLTFLVLCASSLALLIWVQCFRIVLLTVLAFLVLGLPLGAGLLADRLSPSLPCFDILLPILHLLSALNSGVNPLIYFFMGR input pdb
Peptide sequence	MSDAAVDTSSEITTK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.8772	1.96618	11.0203	102
cluster_2.pdb ( medoid)	23.8387	5.83086	16.4852	139
cluster_3.pdb ( medoid)	21.8955	5.89161	28.7886	129
cluster_4.pdb ( medoid)	20.7105	4.78019	25.6873	99
cluster_5.pdb ( medoid)	20.1574	5.30821	20.7827	107
cluster_6.pdb ( medoid)	16.0231	5.80412	15.8862	93
cluster_7.pdb ( medoid)	13.517	7.91598	27.1909	107
cluster_8.pdb ( medoid)	11.3314	6.26577	22.3377	71
cluster_9.pdb ( medoid)	9.09775	7.58429	17.1616	69
cluster_10.pdb ( medoid)	8.32144	10.0944	20.3985	84