CABS-dock: 4cfc17f122e01d4

Project name: 4cfc17f122e01d4

Status: done

submitted: 2026-03-12 13:49:18, status changed: 2026-03-12 21:24:44

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	RRMKWKVQLFGSNDAKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEEEECCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	15.4492	8.67358	43.5187	134
cluster_2.pdb ( medoid)	15.2566	8.58643	43.527	131
cluster_3.pdb ( medoid)	12.963	11.34	39.5011	147
cluster_4.pdb ( medoid)	9.58016	7.93306	20.5698	76
cluster_5.pdb ( medoid)	6.67707	15.8752	38.834	106
cluster_6.pdb ( medoid)	6.23311	11.0699	36.8114	69
cluster_7.pdb ( medoid)	6.02292	13.4486	42.2735	81
cluster_8.pdb ( medoid)	5.94271	14.6398	39.7783	87
cluster_9.pdb ( medoid)	5.82844	19.2161	52.2127	112
cluster_10.pdb ( medoid)	3.6726	15.5203	39.6127	57