CABS-dock: 4d35bbe74f4c88d

Project name: 4d35bbe74f4c88d

Status: done

submitted: 2026-03-19 14:01:56, status changed: 2026-03-19 14:56:47

Project settings

Protein sequence(s)	RNKLAYNMGHYAGKATIFGLAAWALLA input pdb
Peptide sequence	KTKQQFLIKAQTQLFKVFGYTL
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHHHHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.5358	4.74213	21.7256	178
cluster_2.pdb ( medoid)	23.9872	6.67023	21.4488	160
cluster_3.pdb ( medoid)	21.033	7.89236	22.0262	166
cluster_4.pdb ( medoid)	13.792	6.16301	12.9873	85
cluster_5.pdb ( medoid)	11.4545	6.98414	17.8604	80
cluster_6.pdb ( medoid)	10.614	4.805	18.6533	51
cluster_7.pdb ( medoid)	10.5552	9.37923	21.5109	99
cluster_8.pdb ( medoid)	8.58012	8.50804	18.7236	73
cluster_9.pdb ( medoid)	7.45157	9.93079	18.8357	74
cluster_10.pdb ( medoid)	2.6477	12.8413	21.3488	34