CABS-dock: 4dad1ecfc25c2e8

Project name: 4dad1ecfc25c2e8

Status: done

submitted: 2026-06-14 07:34:02, status changed: 2026-06-14 16:31:43

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	QFIPYP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	301.037	0.23253	4.0486	70
cluster_2.pdb ( medoid)	37.3033	3.05603	8.56441	114
cluster_3.pdb ( medoid)	19.4187	9.52691	32.1693	185
cluster_4.pdb ( medoid)	17.49	6.51801	27.5444	114
cluster_5.pdb ( medoid)	16.606	7.70806	16.8964	128
cluster_6.pdb ( medoid)	15.3926	8.70548	32.2757	134
cluster_7.pdb ( medoid)	10.1959	12.2599	35.5304	125
cluster_8.pdb ( medoid)	8.19406	5.36974	24.5133	44
cluster_9.pdb ( medoid)	4.6788	10.259	35.117	48
cluster_10.pdb ( medoid)	2.31382	16.423	30.9902	38