CABS-dock: 6A8G

Project name: 6A8G_IG2

Status: done

submitted: 2026-07-16 10:04:06, status changed: 2026-07-16 14:21:35

Project settings

Protein sequence(s)	IVGGEFTEVENQPWFAAIYQKNKSPPSFKCGGSLISPCWVASAAHCFIQLPKKENYVVYLGQSKESSYNPGEMKFEVEQLILHEYYREDSLAYHNDIALLKIRTSTGQCAQPSRSIQTIALPPRFTDAPFGSDCEITGFGKESESDYLYPKNLKMSVVKLVSHEQCMQPHYYGSEINYKMLCAADPEWKTDSCKGDSGGPLICNIEGRPTLSGIVSWGRGCAEKNKPGVYTRVSHFLDWIQSHIG input pdb
Peptide sequence	CPAYSRYIGC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.5772	2.15212	12.8157	111
cluster_2.pdb ( medoid)	21.3307	6.70396	26.5871	143
cluster_3.pdb ( medoid)	19.5015	5.48676	23.9348	107
cluster_4.pdb ( medoid)	18.1801	7.42572	32.7695	135
cluster_5.pdb ( medoid)	14.4625	8.15906	46.0179	118
cluster_6.pdb ( medoid)	11.8843	8.6669	28.7059	103
cluster_7.pdb ( medoid)	10.907	6.14284	22.4094	67
cluster_8.pdb ( medoid)	10.273	8.17679	35.3036	84
cluster_9.pdb ( medoid)	7.21885	15.792	36.212	114
cluster_10.pdb ( medoid)	1.12726	15.9679	35.1054	18