CABS-dock: 4f57c779019885

Project name: 4f57c779019885

Status: done

submitted: 2026-04-20 01:40:50, status changed: 2026-04-20 08:28:06

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	DDIVLDNNEEDLDTSDEAMY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHCCCCCHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.2954	4.74395	40.7333	120
cluster_2.pdb ( medoid)	22.4668	3.20472	27.3719	72
cluster_3.pdb ( medoid)	14.423	10.608	59.0175	153
cluster_4.pdb ( medoid)	13.0667	6.04591	15.9467	79
cluster_5.pdb ( medoid)	12.8143	10.6912	36.8634	137
cluster_6.pdb ( medoid)	9.61837	14.5555	62.6493	140
cluster_7.pdb ( medoid)	8.70778	13.6659	42.4378	119
cluster_8.pdb ( medoid)	7.00942	13.4105	41.1197	94
cluster_9.pdb ( medoid)	3.4337	16.0177	36.8341	55
cluster_10.pdb ( medoid)	1.38938	22.3121	58.0281	31