CABS-dock: GGA3-VHS-10

Project name: GGA3-VHS-10

Status: done

submitted: 2026-07-09 12:03:21, status changed: 2026-07-09 14:28:34

Project settings

Protein sequence(s)	ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI input pdb
Peptide sequence	HNAEWPL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.1626	4.36023	34.1454	210
cluster_2.pdb ( medoid)	37.0012	5.54036	28.7541	205
cluster_3.pdb ( medoid)	22.7874	4.82724	20.7374	110
cluster_4.pdb ( medoid)	20.8216	5.47508	22.2142	114
cluster_5.pdb ( medoid)	15.1943	6.25234	16.9618	95
cluster_6.pdb ( medoid)	14.4766	6.76957	16.3675	98
cluster_7.pdb ( medoid)	7.38343	7.85543	15.025	58
cluster_8.pdb ( medoid)	6.94064	8.64473	29.446	60
cluster_9.pdb ( medoid)	5.48449	6.7463	12.6618	37
cluster_10.pdb ( medoid)	1.94564	6.68159	16.5689	13