CABS-dock: L3MBTL2

Project name: L3MBTL2

Status: done

submitted: 2025-12-14 13:02:07, status changed: 2025-12-14 21:03:43

Project settings

Protein sequence(s)	GDRVADVIESSIGDSVSRALTHALPAPTGQNTQVSSHRLDTGKVPALQAAEIGASSNASDESMIETRCVLNSHSTAETTLDSFFSRAGLVGEIDLPLEGTTNPNGYANWDIDITGYAQMRRKVELFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPAQVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPLVVRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTL input pdb
Peptide sequence	WEQKQVQIKTLEGEFSVTMW
Simulation mc cycles	50
Peptide secondary structure	CCCEEEEEEEECEEEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	35.5743	2.89535	12.4425	103
cluster_2.pdb ( medoid)	20.7851	7.98649	34.65	166
cluster_3.pdb ( medoid)	16.4551	11.2427	41.7596	185
cluster_4.pdb ( medoid)	8.24122	8.85791	40.6774	73
cluster_5.pdb ( medoid)	7.26163	17.9023	43.6801	130
cluster_6.pdb ( medoid)	4.93764	15.797	33.3978	78
cluster_7.pdb ( medoid)	4.68776	7.25293	24.2054	34
cluster_8.pdb ( medoid)	4.16927	14.6308	37.3647	61
cluster_9.pdb ( medoid)	2.50155	23.1856	46.9713	58
cluster_10.pdb ( medoid)	1.47735	27.0756	58.5765	40