CABS-dock: 50be04bf46d140d

Project name: 50be04bf46d140d

Status: done

submitted: 2026-01-19 13:47:49, status changed: 2026-01-20 00:13:25

Project settings

Protein sequence(s)	AQPRDDCQTRCGDVPIDYPFGISTGCYYPGDDSFNITCEEDKPNVLSNIEVLNFNHSGQLRGLIPRSTVCYDQQTNNDFESLWFRLDNLSFSPNNKFTLVGCNAWALLSTFGIQNYSTGCMSLCDTPPPPNSKCNGVGCCRTEVSIPLDSHRIETQPSRFENMTSVEHFNPCSYAFFVEDGMFNFSSLEDLKDLRNVTRFPVLLDWSIGNQTCEQVVGRNICGGNSTCFDSTRGKGYNCKCLQGFDGNPYLSDGCQDINECTTRIHNCSDTSTCENTLGSFHCQCPSGSDLNTTTMSCIDTPKEEPKYL input pdb
Peptide sequence	TIDNVHAQNVGEDLITVKGEGGAAV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.0311	2.08198	4.41844	100
cluster_2.pdb ( medoid)	22.9793	5.2221	21.5712	120
cluster_3.pdb ( medoid)	11.5029	9.21508	23.4909	106
cluster_4.pdb ( medoid)	9.46823	6.12575	13.5141	58
cluster_5.pdb ( medoid)	7.85248	5.22128	7.86117	41
cluster_6.pdb ( medoid)	7.22865	6.91692	26.3281	50
cluster_7.pdb ( medoid)	4.67352	4.70738	9.21616	22
cluster_8.pdb ( medoid)	2.87135	17.0652	36.1148	49
cluster_9.pdb ( medoid)	1.76621	18.6841	37.3029	33
cluster_10.pdb ( medoid)	1.30576	16.0826	28.4966	21