CABS-dock: 5267dd481f4c6c7

Project name: 5267dd481f4c6c7

Status: done

submitted: 2026-06-14 07:32:36, status changed: 2026-06-14 16:47:00

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	FLPPLQPAVMVPF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.3291	5.09678	22.2405	124
cluster_2.pdb ( medoid)	21.5636	7.74452	31.0347	167
cluster_3.pdb ( medoid)	20.7249	4.29435	13.1729	89
cluster_4.pdb ( medoid)	15.0795	8.28941	25.6265	125
cluster_5.pdb ( medoid)	11.9172	9.23033	43.8905	110
cluster_6.pdb ( medoid)	9.92657	12.4917	43.7206	124
cluster_7.pdb ( medoid)	9.27339	5.28394	15.742	49
cluster_8.pdb ( medoid)	7.18401	8.35188	20.082	60
cluster_9.pdb ( medoid)	6.16782	11.6735	27.2256	72
cluster_10.pdb ( medoid)	4.54298	17.6096	38.5576	80