CABS-dock: Rank

Project name: Rank_01

Status: done

submitted: 2026-04-04 14:06:14, status changed: 2026-04-04 17:58:25

Project settings

Protein sequence(s)	GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	QNCASCLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.3203	6.13909	37.3538	180
cluster_2.pdb ( medoid)	23.1456	7.21521	31.4012	167
cluster_3.pdb ( medoid)	22.867	6.82206	28.8506	156
cluster_4.pdb ( medoid)	9.20638	5.21377	26.2973	48
cluster_5.pdb ( medoid)	7.21808	11.0833	31.4596	80
cluster_6.pdb ( medoid)	5.59145	15.2018	43.6964	85
cluster_7.pdb ( medoid)	5.36973	14.8983	34.5342	80
cluster_8.pdb ( medoid)	5.0861	16.7122	45.7002	85
cluster_9.pdb ( medoid)	3.61394	18.816	39.1275	68
cluster_10.pdb ( medoid)	3.47047	14.6954	27.8355	51