CABS-dock: 52915076f28d7ab

Project name: 52915076f28d7ab

Status: done

submitted: 2026-06-23 15:59:45, status changed: 2026-06-23 21:26:59

Project settings

Protein sequence(s)	AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPAGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVHPQAEAGITGTWYNQLGSTFIVTAGADGALTGTYESSRYVLTGRYDSAPASGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV input pdb
Peptide sequence	AGDWVGWCGGSGAET
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	56.5262	3.55588	12.1034	201
cluster_2.pdb ( medoid)	33.0662	6.38114	34.6637	211
cluster_3.pdb ( medoid)	13.1626	4.63436	17.751	61
cluster_4.pdb ( medoid)	9.16872	9.48879	28.4969	87
cluster_5.pdb ( medoid)	7.65325	11.4984	24.535	88
cluster_6.pdb ( medoid)	6.8801	13.5172	31.9761	93
cluster_7.pdb ( medoid)	6.30863	8.87673	16.8991	56
cluster_8.pdb ( medoid)	5.43204	14.1752	32.0318	77
cluster_9.pdb ( medoid)	5.22977	12.8113	28.7574	67
cluster_10.pdb ( medoid)	3.89733	15.1386	34.6062	59