CABS-dock: 1POZ edited structure

Project name: 1POZ edited structure_mm24

Status: done

submitted: 2025-06-03 14:11:36, status changed: 2025-06-03 17:02:14

Project settings

Protein sequence(s)	AQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDI input pdb
Peptide sequence	KEEDKHLKFRISHEL
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.0772	4.02553	36.831	109
cluster_2.pdb ( medoid)	26.6994	3.55813	23.2161	95
cluster_3.pdb ( medoid)	23.1664	5.6979	20.8668	132
cluster_4.pdb ( medoid)	18.37	7.89329	23.7553	145
cluster_5.pdb ( medoid)	15.3297	7.24086	21.3279	111
cluster_6.pdb ( medoid)	13.1291	5.78865	14.9304	76
cluster_7.pdb ( medoid)	8.71423	9.06563	26.5174	79
cluster_8.pdb ( medoid)	7.15928	13.8282	31.5387	99
cluster_9.pdb ( medoid)	7.09143	14.9476	34.2007	106
cluster_10.pdb ( medoid)	4.15159	11.5618	27.4777	48