Project name: 2_SRC_RUTU

Status: done

submitted: 2023-11-27 16:02:42, status changed: 2023-11-28 02:50:31

Project settings
Protein sequence(s) TFVALYDYESRTETDLSFKKGERLQIVNNTEEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP input pdb
Peptide sequence LDLDDFQGS
Simulation mc cycles50
Peptide secondary structure psipred CCHHHCCCC
Contact information
273:A 295:A 340:A 341:A 404:A
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 24.4437 5.48198 16.8279 134
cluster_2.pdb ( medoid) 22.5484 5.10014 34.3115 115
cluster_3.pdb ( medoid) 14.7174 10.5997 55.3304 156
cluster_4.pdb ( medoid) 12.65 4.66402 12.4193 59
cluster_5.pdb ( medoid) 12.3586 9.06252 34.7856 112
cluster_6.pdb ( medoid) 10.822 7.29996 19.1646 79
cluster_7.pdb ( medoid) 10.0591 8.05237 29.0066 81
cluster_8.pdb ( medoid) 9.91065 8.37483 20.3084 83
cluster_9.pdb ( medoid) 9.30218 7.41762 31.2255 69
cluster_10.pdb ( medoid) 9.18195 12.1978 45.5266 112