CABS-dock: cpca01

Project name: cpca01

Status: done

submitted: 2026-06-24 06:03:43, status changed: 2026-06-24 11:41:51

Project settings

Protein sequence(s)	WRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDDTLWGPGDSRLQLNFRATQPLNGRVIEASFP input pdb
Peptide sequence	PLEDKEKNPLAG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	53.8984	2.89433	11.7753	156
cluster_2.pdb ( medoid)	47.8201	5.26975	32.5699	252
cluster_3.pdb ( medoid)	38.3799	3.10058	9.66697	119
cluster_4.pdb ( medoid)	20.1191	5.71596	31.6038	115
cluster_5.pdb ( medoid)	16.8701	7.23173	33.8069	122
cluster_6.pdb ( medoid)	9.83703	5.59112	30.1433	55
cluster_7.pdb ( medoid)	9.47933	6.43506	32.3344	61
cluster_8.pdb ( medoid)	5.02061	7.76798	14.6261	39
cluster_9.pdb ( medoid)	4.17457	9.34229	34.3879	39
cluster_10.pdb ( medoid)	2.32383	18.0736	44.1308	42